By Mitchell Model, Model Mitchell, Tisdall James, James Tisdall
Robust, versatile, and simple to exploit, Python is a perfect language for construction software program instruments and purposes for all times technology study and improvement. This designated booklet exhibits you the way to software with Python, utilizing code examples taken at once from bioinformatics. very quickly, you can be utilizing subtle ideas and Python modules which are really powerful for bioinformatics programming. Bioinformatics Programming utilizing Python is ideal for someone concerned with bioinformatics -- researchers, aid employees, scholars, and software program builders drawn to writing bioinformatics purposes. you will discover it valuable even if you already use Python, write code in one other language, or haven't any programming adventure in any respect. it is an exceptional self-instruction instrument, in addition to a convenient reference whilst dealing with the demanding situations of real-life programming initiatives. get to grips with Python's basics, together with how you can strengthen basic purposes the right way to use Python modules for trend matching, established textual content processing, on-line information retrieval, and database entry observe generalized styles that conceal a wide share of the way Python code is utilized in bioinformatics easy methods to follow the rules and methods of object-oriented programming enjoy the "tips and traps" part in every one bankruptcy
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Extra resources for Bioinformatics Programming Using Python
For and expressions, the first operand is returned if it is false, and otherwise the second operand is returned. For or expressions, the first operand is returned if it is true, and otherwise the second operand is returned. For example, '' and 'A' evaluates to '', not False, while '' or 'A' evaluates to 'A', not True. We’ll see examples later of idioms based on this behavior. • Function calls are both expressions and statements. • Experiment with using the sep and end keyword arguments to print.
Flags, being Boolean, normally have default values of False. Example 2-12. , do not need to be included in calls to the function). • They are defined by specifying default values in the function’s parameter list; if the keyword does not appear in a call to the function, its default value is used. , required) arguments must appear before any keyword parameters. • Keyword parameters may appear in any order. • With a few exceptions, keyword arguments may be provided positionally in a function call in the order in which the keywords appear in the function’s definition.
Line assigns the name seq to the result of calling the method upper on the value of base_sequence. The purpose of line is to simplify the rest of the definition by ensuring that all the base characters will be uppercase even if Defining Functions | 27 the function is called with a lowercase string. By assigning a name to the result of upper, we avoid having to repeat that call four times later. Lines and compare the length of the sequence string to the sum of the number of Ts, Cs, As, and Gs in the sequence string.